7L7D
Crystal structure of SARS-CoV-2 spike RBD in complex with human monoclonal antibody AZD8895
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | APS BEAMLINE 21-ID-F |
| Synchrotron site | APS |
| Beamline | 21-ID-F |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2020-09-17 |
| Detector | RAYONIX MX-300 |
| Wavelength(s) | 0.97872 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 44.118, 81.583, 101.157 |
| Unit cell angles | 90.00, 94.60, 90.00 |
Refinement procedure
| Resolution | 43.980 - 2.500 |
| R-factor | 0.1869 |
| Rwork | 0.185 |
| R-free | 0.23100 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 6xc2 |
| RMSD bond length | 0.003 |
| RMSD bond angle | 0.563 |
| Data reduction software | XDS |
| Data scaling software | SCALA |
| Phasing software | PHASER |
| Refinement software | PHENIX ((1.17.1_3660: ???)) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 43.980 | 2.630 |
| High resolution limit [Å] | 2.500 | 2.500 |
| Rmerge | 0.046 | 0.245 |
| Number of reflections | 24896 | 3598 |
| <I/σ(I)> | 19.2 | |
| Completeness [%] | 99.9 | |
| Redundancy | 3.7 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 291 | 16% PEG3350, 0.2 M Tris-HCl, pH 8.5 |
