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7KYV

Crystal structure of Plasmodium falciparum dihydroorotate dehydrogenase bound with Inhibitor DSM634 (3-methyl-N-(1-(5-methylisoxazol-3-yl)ethyl)-4-(4-(trifluoromethyl)benzyl)-1H-pyrrole-2-carboxamide)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 19-ID
Synchrotron siteAPS
Beamline19-ID
Temperature [K]100
Detector technologyCCD
Collection date2017-06-15
DetectorADSC QUANTUM 315r
Wavelength(s)0.97943
Spacegroup nameP 64
Unit cell lengths85.288, 85.288, 139.216
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution42.640 - 2.400
R-factor0.1823
Rwork0.180
R-free0.19930
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3i65
RMSD bond length0.007
RMSD bond angle0.716
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwarePHENIX (1.17.1_3660)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]42.6402.440
High resolution limit [Å]2.4002.400
Rpim0.0170.721
Number of reflections224331121
<I/σ(I)>46.221.1
Completeness [%]100.0100
Redundancy9.6
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5.12930.16 M AmSO4, 18% v/v PEG4000, 100 mM Sodium acetate pH 5.1, 24% v/v Glycerol

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PDB entries from 2024-05-15

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