7KP8
asymmetric mTNF-alpha hTNFR1 complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2012-08-17 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 0.9787 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 133.577, 133.577, 141.445 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.610 - 3.150 |
R-factor | 0.2241 |
Rwork | 0.222 |
R-free | 0.27160 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | unpublished structure |
RMSD bond length | 0.011 |
RMSD bond angle | 1.222 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | REFMAC (5.7.0029) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 48.558 | 3.320 |
High resolution limit [Å] | 3.150 | 9.960 | 3.150 |
Rmerge | 0.190 | 0.045 | 0.896 |
Rmeas | 0.212 | 0.053 | 1.007 |
Rpim | 0.095 | 0.027 | 0.450 |
Number of reflections | 22757 | 810 | 3249 |
<I/σ(I)> | 8.3 | 5.2 | 0.8 |
Completeness [%] | 99.9 | 97.8 | 100 |
Redundancy | 4.9 | 4.2 | 5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 7.65 | 298 | 800 mM sodium potassium tartrate, 0.45% PEG 5000 MME, 100 mM Tris, pH7.65. Vapor diffusion, sitting drop, temperature 289K |