7KO0
Crystal structure of the second bromodomain (BD2) of human BRD4 bound to SG3-179
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-12-10 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 1.000 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 52.400, 72.640, 33.360 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 33.360 - 1.900 |
R-factor | 0.1739 |
Rwork | 0.172 |
R-free | 0.19900 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4z93 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 33.360 | 33.360 | 1.950 |
High resolution limit [Å] | 1.900 | 8.500 | 1.900 |
Rmerge | 0.044 | 0.025 | 0.326 |
Rmeas | 0.048 | 0.027 | 0.352 |
Total number of observations | 72255 | ||
Number of reflections | 10502 | 144 | 764 |
<I/σ(I)> | 28.51 | 53.86 | 7.51 |
Completeness [%] | 99.5 | 98 | 99 |
Redundancy | 6.88 | 5.097 | 7.055 |
CC(1/2) | 0.999 | 1.000 | 0.985 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 0.1 M HEPES pH 7.5, 20% PEG 3,350 |