Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7KG3

Crystal structure of CoV-2 Nsp3 Macrodomain

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRL BEAMLINE BL12-2
Synchrotron siteSSRL
BeamlineBL12-2
Temperature [K]100
Detector technologyPIXEL
Collection date2020-06-12
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.9795
Spacegroup nameP 31 2 1
Unit cell lengths112.594, 112.594, 41.407
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution38.110 - 1.450
R-factor0.1584
Rwork0.158
R-free0.17740
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6w02
RMSD bond length0.014
RMSD bond angle1.421
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX (1.18.2_3874)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]38.1101.502
High resolution limit [Å]1.4501.450
Rmerge0.0983.211
Rmeas0.1033.374
Rpim0.0321.027
Number of reflections531265190
<I/σ(I)>11.531.35
Completeness [%]94.180.03
Redundancy10.210.4
CC(1/2)0.9980.412
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP30870% saturated ammonium sulfate, 0.4% BME, 200 mM Imidazole / Malate pH 7.4, 50 mM MES pH 6.0

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon