7K3J
Crystal structure of dLC8 in complex with Panoramix TQT+TQ peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-07-24 |
Detector | PSI PILATUS 6M |
Wavelength(s) | 0.9791 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 38.100, 175.230, 51.020 |
Unit cell angles | 90.00, 105.48, 90.00 |
Refinement procedure
Resolution | 49.169 - 2.500 |
R-factor | 0.2505 |
Rwork | 0.249 |
R-free | 0.27200 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3zke |
RMSD bond length | 0.003 |
RMSD bond angle | 0.686 |
Data reduction software | iMOSFLM |
Data scaling software | SCALA (3.3.22) |
Phasing software | PHENIX |
Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 87.615 | 49.169 | 2.640 |
High resolution limit [Å] | 2.500 | 7.910 | 2.500 |
Rmerge | 0.059 | 0.443 | |
Rmeas | 0.081 | 0.065 | 0.484 |
Rpim | 0.032 | 0.026 | 0.190 |
Total number of observations | 137634 | 4373 | 20005 |
Number of reflections | 21856 | 692 | 3184 |
<I/σ(I)> | 12.8 | 26.9 | 3.5 |
Completeness [%] | 98.2 | 95.6 | 98.4 |
Redundancy | 6.3 | 6.3 | 6.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 293 | 0.2 M Li2SO4, 0.1 M Tris pH 8.5, 40% (v/v) PEG 400 |