7JTF
Structure of Hepatitis C Virus Envelope Glycoprotein E2 core from genotype 6a bound to broadly neutralizing antibody RM2-01
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-04-06 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 1.0332 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 89.732, 64.887, 145.208 |
Unit cell angles | 90.00, 105.16, 90.00 |
Refinement procedure
Resolution | 29.860 - 3.350 |
R-factor | 0.2449 |
Rwork | 0.242 |
R-free | 0.29590 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6bkb |
RMSD bond length | 0.002 |
RMSD bond angle | 0.449 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 3.410 |
High resolution limit [Å] | 3.350 | 3.350 |
Number of reflections | 21566 | 631 |
<I/σ(I)> | 16.2 | |
Completeness [%] | 91.5 | |
Redundancy | 4.8 | |
CC(1/2) | 0.960 | 0.900 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 293 | 30% PEG 400, 0.1M Cadmium chloride, 0.1M sodium acetate, pH 4.6 |