7EO8
Crystal structure of SARS coronavirus main protease in complex with an inhibitor Shikonin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2020-11-16 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97915 |
Spacegroup name | P 1 |
Unit cell lengths | 55.336, 60.620, 68.295 |
Unit cell angles | 90.94, 102.70, 108.62 |
Refinement procedure
Resolution | 27.327 - 2.281 |
R-factor | 0.229401915012 |
Rwork | 0.227 |
R-free | 0.27198 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7dqz |
RMSD bond length | 0.007 |
RMSD bond angle | 0.958 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.030 | 2.400 |
High resolution limit [Å] | 2.280 | 2.280 |
Rmerge | 0.046 | 0.412 |
Number of reflections | 35348 | 5295 |
<I/σ(I)> | 14.4 | |
Completeness [%] | 95.0 | |
Redundancy | 3.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.1M Hepes pH7.5, 10% PEG8000, 8% Ethylene glycol |