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7EM5

Crystal structure of the PI5P4Kbeta F205L-XTP complex

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPHOTON FACTORY BEAMLINE BL-17A
Synchrotron sitePhoton Factory
BeamlineBL-17A
Temperature [K]95
Detector technologyPIXEL
Collection date2018-12-09
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.98
Spacegroup nameC 2 2 21
Unit cell lengths109.561, 186.153, 105.655
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution47.211 - 2.800
R-factor0.219
Rwork0.217
R-free0.26070
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6k4g
RMSD bond length0.009
RMSD bond angle1.106
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMOLREP
Refinement softwarePHENIX (1.14_3260)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]48.6302.950
High resolution limit [Å]2.8002.800
Rmerge0.0610.996
Number of reflections269193787
<I/σ(I)>25.482.48
Completeness [%]99.798.4
Redundancy8.98.5
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.12939%(w/v) PEG4000, 0.1 M sodium citrate pH 6.0, 0.1 M magnesium acetate, 0.1 M lithium acetate

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