7E4R
Crystal structure of tubulin in complex with D-DM1-SMe
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-12-19 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97908 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 104.982, 157.229, 182.574 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.452 - 2.597 |
R-factor | 0.2246 |
Rwork | 0.224 |
R-free | 0.26520 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4tv8 |
RMSD bond length | 0.002 |
RMSD bond angle | 0.762 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.8.4_1496) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.660 |
High resolution limit [Å] | 2.597 | 6.410 | 2.600 |
Rmerge | 0.149 | 0.055 | |
Rmeas | 0.153 | 0.060 | |
Rpim | 0.065 | 0.024 | 0.429 |
Number of reflections | 93603 | 6602 | 6144 |
<I/σ(I)> | 3.4 | ||
Completeness [%] | 99.9 | 99.8 | 100 |
Redundancy | 6.8 | 6.4 | 7 |
CC(1/2) | 0.996 | 0.655 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.7 | 293 | 6% poly(ethylene glycol) 4000, 8% glycerol, 0.1 M MES (pH 6.7), 30 mM CaCl2, 30 mM MgCl2 |