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7DPN

Crystal structure of BRD2(BD1)with ligand ZB-BD-224 bound

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL19U1
Synchrotron siteSSRF
BeamlineBL19U1
Temperature [K]100
Detector technologyPIXEL
Collection date2019-05-16
DetectorDECTRIS PILATUS3 S 6M
Wavelength(s)0.98
Spacegroup nameC 1 2 1
Unit cell lengths114.784, 55.778, 68.098
Unit cell angles90.00, 94.25, 90.00
Refinement procedure
Resolution45.454 - 1.800
R-factor0.189761132575
Rwork0.188
R-free0.21879
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2yek
RMSD bond length0.007
RMSD bond angle0.904
Data reduction softwareHKL-3000
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX (1.12_2829)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]46.0001.860
High resolution limit [Å]1.7901.800
Rmerge0.1680.791
Rmeas0.1680.861
Rpim0.0690.985
Number of reflections398023928
<I/σ(I)>99.6
Completeness [%]99.5
Redundancy6.7
CC(1/2)0.9410.691
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP28925-30% PEG MME 5000, 0.2M ammonium sulfate, 0.1M MES pH 6.7

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