7DPN
Crystal structure of BRD2(BD1)with ligand ZB-BD-224 bound
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-05-16 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.98 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 114.784, 55.778, 68.098 |
Unit cell angles | 90.00, 94.25, 90.00 |
Refinement procedure
Resolution | 45.454 - 1.800 |
R-factor | 0.189761132575 |
Rwork | 0.188 |
R-free | 0.21879 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2yek |
RMSD bond length | 0.007 |
RMSD bond angle | 0.904 |
Data reduction software | HKL-3000 |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.000 | 1.860 |
High resolution limit [Å] | 1.790 | 1.800 |
Rmerge | 0.168 | 0.791 |
Rmeas | 0.168 | 0.861 |
Rpim | 0.069 | 0.985 |
Number of reflections | 39802 | 3928 |
<I/σ(I)> | 99.6 | |
Completeness [%] | 99.5 | |
Redundancy | 6.7 | |
CC(1/2) | 0.941 | 0.691 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 289 | 25-30% PEG MME 5000, 0.2M ammonium sulfate, 0.1M MES pH 6.7 |