7DL9
Crystal structure of nucleoside transporter NupG
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL18U1 |
Synchrotron site | SSRF |
Beamline | BL18U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-11-20 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.9791 |
Spacegroup name | P 1 |
Unit cell lengths | 42.874, 68.715, 79.027 |
Unit cell angles | 81.11, 74.27, 84.02 |
Refinement procedure
Resolution | 25.566 - 3.000 |
R-factor | 0.2534 |
Rwork | 0.250 |
R-free | 0.27980 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | predicted model by the robetta website |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.3) |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 29.540 | 29.540 | 3.180 |
High resolution limit [Å] | 3.000 | 9.000 | 3.000 |
Rmerge | 0.153 | 0.058 | 0.452 |
Total number of observations | 59909 | 2077 | 9914 |
Number of reflections | 16931 | 617 | 2727 |
<I/σ(I)> | 6.8 | 14.1 | 2.8 |
Completeness [%] | 98.8 | 95.7 | 98.5 |
Redundancy | 3.5 | 3.4 | 3.6 |
CC(1/2) | 0.986 | 0.995 | 0.892 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | LIPIDIC CUBIC PHASE | 293 | 0.1 M Citrate sodium (pH=5), 0.1 M NaCl 0.1 M MgCl2 , 30% PEG 600 |