7CD6
mAPE1-recessed dsDNA product complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSRRC BEAMLINE TPS 05A |
Synchrotron site | NSRRC |
Beamline | TPS 05A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-04-06 |
Detector | RAYONIX MX300-HS |
Wavelength(s) | 0.99984 |
Spacegroup name | P 63 2 2 |
Unit cell lengths | 124.650, 124.650, 138.467 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 29.940 - 2.701 |
R-factor | 0.1816 |
Rwork | 0.178 |
R-free | 0.21990 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1hd7 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | BALBES |
Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 30.000 | 30.000 | 2.800 |
High resolution limit [Å] | 2.700 | 5.800 | 2.700 |
Rmerge | 0.112 | 0.062 | 0.459 |
Rmeas | 0.116 | 0.063 | 0.485 |
Rpim | 0.026 | 0.013 | 0.151 |
Total number of observations | 305693 | ||
Number of reflections | 17975 | 1966 | 1733 |
<I/σ(I)> | 7.4 | ||
Completeness [%] | 99.9 | 99.7 | 99.6 |
Redundancy | 17 | 22.4 | 8.9 |
CC(1/2) | 0.999 | 0.865 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 293 | 0.1M Lithium sulfate monohydrate, 0.1M Na citrate tribasic dihydrate pH 5.5, 20% w/v Polyethylene glycol 1000 |