7B46
Structural basis of reactivation of oncogenic p53 mutants by a small molecule: methylene quinuclidinone (MQ). Human wild-type p53DBD bound to DNA and MQ: wt-DNA-MQ (P1)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-1 |
Synchrotron site | ESRF |
Beamline | ID23-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-03-02 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97200 |
Spacegroup name | P 1 |
Unit cell lengths | 54.867, 58.312, 78.122 |
Unit cell angles | 82.88, 87.47, 72.81 |
Refinement procedure
Resolution | 47.730 - 2.020 |
R-factor | 0.1803 |
Rwork | 0.179 |
R-free | 0.20340 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2ac0 |
RMSD bond length | 0.006 |
RMSD bond angle | 0.869 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (1.18.2-3874) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.050 |
High resolution limit [Å] | 2.000 | 5.480 | 2.020 |
Rmerge | 0.082 | 0.058 | 0.413 |
Rmeas | 0.098 | 0.069 | 0.499 |
Rpim | 0.054 | 0.037 | 0.276 |
Number of reflections | 58675 | 2977 | 2893 |
<I/σ(I)> | 7.4 | ||
Completeness [%] | 95.5 | 96.8 | 94.1 |
Redundancy | 3.2 | 3.3 | 3.1 |
CC(1/2) | 0.992 | 0.671 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 292 | Protein/DNA ratio 1:2.4, 0.1M DL-Malic acid pH=7.0, 19% w/v PEG 3350 |