7AMP
Crystal structure of the complex of HuJovi-1 Fab with the human A6 T-cell receptor TRBC1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-07-01 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9282 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 117.390, 91.050, 125.260 |
Unit cell angles | 90.00, 93.82, 90.00 |
Refinement procedure
Resolution | 54.440 - 2.640 |
R-factor | 0.239 |
Rwork | 0.236 |
R-free | 0.28910 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4c56 5men 3d85 1a4j |
RMSD bond length | 0.007 |
RMSD bond angle | 1.161 |
Data reduction software | xia2 |
Data scaling software | xia2 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 54.440 | 2.690 |
High resolution limit [Å] | 2.640 | 2.640 |
Rmerge | 0.118 | 1.669 |
Number of reflections | 38805 | 1938 |
<I/σ(I)> | 9.9 | 0.93 |
Completeness [%] | 99.9 | 99.8 |
Redundancy | 6.1 | 6.3 |
CC(1/2) | 0.998 | 0.625 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 295 | 11.2 mg/ml complex in PBS buffer. 0.1 M sodium cacodylate pH 6.0, 3% PEG 8000, 5 mM Zn acetate, 4% benzamidine. |