7A3J
Crystal structure of DPP8 in complex with a 4-oxo-b-lactam based inhibitor, A272
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X10SA |
Synchrotron site | SLS |
Beamline | X10SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-11-20 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 1.0 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 164.377, 252.959, 260.869 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.540 - 3.000 |
R-factor | 0.1987 |
Rwork | 0.197 |
R-free | 0.23230 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6eop |
RMSD bond length | 0.007 |
RMSD bond angle | 1.152 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.540 | 49.540 | 3.080 |
High resolution limit [Å] | 3.000 | 27.000 | 3.000 |
Rmerge | 0.081 | 0.019 | 1.125 |
Rmeas | 0.086 | 0.021 | 1.198 |
Total number of observations | 929839 | ||
Number of reflections | 108427 | 148 | 7996 |
<I/σ(I)> | 18.5 | 74.84 | 2.2 |
Completeness [%] | 100.0 | 80 | 100 |
Redundancy | 8.576 | 6.534 | 8.529 |
CC(1/2) | 0.999 | 0.999 | 0.802 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 277 | 0.46 M Na citrate |