6ZYQ
Structure of NDM-1 with 2-Mercaptomethyl-thiazolidine D-syn-1b
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I03 |
| Synchrotron site | Diamond |
| Beamline | I03 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2018-03-04 |
| Detector | DECTRIS PILATUS3 6M |
| Wavelength(s) | 0.97629 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 70.180, 73.840, 77.440 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 38.720 - 1.700 |
| R-factor | 0.1785 |
| Rwork | 0.177 |
| R-free | 0.19760 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 6rmf |
| RMSD bond length | 0.009 |
| RMSD bond angle | 0.988 |
| Data reduction software | XDS |
| Data scaling software | XSCALE |
| Phasing software | PHASER |
| Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 38.720 | 1.740 |
| High resolution limit [Å] | 1.700 | 1.700 |
| Rpim | 0.031 | 0.596 |
| Number of reflections | 44786 | 3076 |
| <I/σ(I)> | 13.1 | 1.2 |
| Completeness [%] | 99.5 | |
| Redundancy | 12.2 | |
| CC(1/2) | 0.999 | 0.473 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 292 | 0.1M bis-tris pH 5.8, 32% PEG 3350, 0.15M NH4SO4 |






