6ZXC
Diguanylate cyclase DgcR (I-site mutant) in activated state
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 93.15 |
Detector technology | PIXEL |
Collection date | 2017-10-13 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 132.812, 247.368, 41.539 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 30.000 - 2.800 |
R-factor | 0.2282 |
Rwork | 0.237 |
R-free | 0.28813 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6zxb |
RMSD bond length | 0.010 |
RMSD bond angle | 1.861 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 45.260 | 2.820 |
High resolution limit [Å] | 2.700 | 2.700 |
Rmerge | 0.144 | 0.901 |
Rmeas | 0.177 | |
Rpim | 0.101 | 0.649 |
Number of reflections | 36666 | 19016 |
<I/σ(I)> | 6.3 | 1.6 |
Completeness [%] | 95.6 | 93.1 |
Redundancy | 4.3 | 4.2 |
CC(1/2) | 0.991 | 0.513 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 289.15 | 0.06 M Divalents, 0.1M Buffer System 1 pH 6.5, 50%v/v Precipitant Mix 2 (Morpheus I A2). Divalents: 0.3M Magnesium chloride hexahydrate; 0.3M Calcium chloride dehydrate. Buffer System 1: 1.0M Imidazole; MES monohydrate (acid), pH 6.5. Precipitant Mix 2: EDO_P8K, 40% v/v Ethylene glycol, 20 % w/v PEG 8000. |