Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6ZXC

Diguanylate cyclase DgcR (I-site mutant) in activated state

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X06DA
Synchrotron siteSLS
BeamlineX06DA
Temperature [K]93.15
Detector technologyPIXEL
Collection date2017-10-13
DetectorDECTRIS PILATUS 2M-F
Wavelength(s)1.0
Spacegroup nameP 21 21 2
Unit cell lengths132.812, 247.368, 41.539
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution30.000 - 2.800
R-factor0.2282
Rwork0.237
R-free0.28813
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6zxb
RMSD bond length0.010
RMSD bond angle1.861
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0267)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]45.2602.820
High resolution limit [Å]2.7002.700
Rmerge0.1440.901
Rmeas0.177
Rpim0.1010.649
Number of reflections3666619016
<I/σ(I)>6.31.6
Completeness [%]95.693.1
Redundancy4.34.2
CC(1/2)0.9910.513
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP289.150.06 M Divalents, 0.1M Buffer System 1 pH 6.5, 50%v/v Precipitant Mix 2 (Morpheus I A2). Divalents: 0.3M Magnesium chloride hexahydrate; 0.3M Calcium chloride dehydrate. Buffer System 1: 1.0M Imidazole; MES monohydrate (acid), pH 6.5. Precipitant Mix 2: EDO_P8K, 40% v/v Ethylene glycol, 20 % w/v PEG 8000.

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon