6ZSL
Crystal structure of the SARS-CoV-2 helicase at 1.94 Angstrom resolution
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-07-07 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9126 |
Spacegroup name | P 1 |
Unit cell lengths | 59.151, 70.120, 84.558 |
Unit cell angles | 102.47, 95.65, 112.79 |
Refinement procedure
Resolution | 57.560 - 1.940 |
R-factor | 0.2115 |
Rwork | 0.209 |
R-free | 0.25310 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6jyt |
RMSD bond length | 0.005 |
RMSD bond angle | 0.755 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 62.120 | 1.970 |
High resolution limit [Å] | 1.940 | 1.940 |
Rmerge | 0.053 | 0.904 |
Rpim | 0.034 | 0.612 |
Number of reflections | 86341 | 4418 |
<I/σ(I)> | 11.1 | 1.1 |
Completeness [%] | 97.3 | 97.2 |
Redundancy | 3.5 | |
CC(1/2) | 0.998 | 0.669 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | 16 % Ethylene Glycol, 8 % PEG 8000, 0.03M Sodium nitrate, 0.03 Sodium phosphate dibasic, 0.03M Ammonium sulfate, 0.05 M Na HEPES, 0.05 M MOPS |