6ZO8
Minocycline binding to the deep binding pocket of AcrB-G621P
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SOLEIL BEAMLINE PROXIMA 2 |
Synchrotron site | SOLEIL |
Beamline | PROXIMA 2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-02-05 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.980 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 146.414, 161.617, 245.041 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.870 - 2.500 |
R-factor | 0.2206 |
Rwork | 0.219 |
R-free | 0.24880 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5jmn |
RMSD bond length | 0.002 |
RMSD bond angle | 1.172 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.31) |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0232) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.870 | 48.820 | 2.540 |
High resolution limit [Å] | 2.500 | 13.690 | 2.500 |
Rmerge | 0.166 | 0.072 | 2.287 |
Rmeas | 0.179 | 0.079 | 2.469 |
Rpim | 0.067 | 0.031 | 0.926 |
Number of reflections | 200541 | 1351 | 9829 |
<I/σ(I)> | 8.9 | 1 | |
Completeness [%] | 100.0 | 97.8 | 100 |
Redundancy | 7 | 6.4 | 7 |
CC(1/2) | 0.996 | 0.996 | 0.347 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.6 | 291 | 0.05M ADA, PH 6.6, 0.15-0.25M AMMONIUM SULFATE, 5% GLYCEROL, 8-9% PEG4000, 0.002M MINOCYCLINE |