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6ZO8

Minocycline binding to the deep binding pocket of AcrB-G621P

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSOLEIL BEAMLINE PROXIMA 2
Synchrotron siteSOLEIL
BeamlinePROXIMA 2
Temperature [K]100
Detector technologyPIXEL
Collection date2017-02-05
DetectorDECTRIS EIGER X 9M
Wavelength(s)0.980
Spacegroup nameP 21 21 21
Unit cell lengths146.414, 161.617, 245.041
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution48.870 - 2.500
R-factor0.2206
Rwork0.219
R-free0.24880
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5jmn
RMSD bond length0.002
RMSD bond angle1.172
Data reduction softwareXDS
Data scaling softwareAimless (0.5.31)
Phasing softwareMOLREP
Refinement softwareREFMAC (5.8.0232)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]48.87048.8202.540
High resolution limit [Å]2.50013.6902.500
Rmerge0.1660.0722.287
Rmeas0.1790.0792.469
Rpim0.0670.0310.926
Number of reflections20054113519829
<I/σ(I)>8.91
Completeness [%]100.097.8100
Redundancy76.47
CC(1/2)0.9960.9960.347
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.62910.05M ADA, PH 6.6, 0.15-0.25M AMMONIUM SULFATE, 5% GLYCEROL, 8-9% PEG4000, 0.002M MINOCYCLINE

222036

PDB entries from 2024-07-03

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