6Z6V
Globular head of C1q in complex with the nanobody C1qNb75
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-06-19 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.976200 |
Spacegroup name | P 2 21 21 |
Unit cell lengths | 61.816, 119.744, 131.772 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 65.890 - 2.190 |
R-factor | 0.1798 |
Rwork | 0.178 |
R-free | 0.22670 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5hzf |
RMSD bond length | 0.010 |
RMSD bond angle | 1.393 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 65.900 | 2.270 |
High resolution limit [Å] | 2.190 | 2.190 |
Number of reflections | 48574 | 2516 |
<I/σ(I)> | 15.7 | |
Completeness [%] | 94.7 | 50 |
Redundancy | 12.7 | 6.1 |
CC(1/2) | 0.999 | 0.630 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 292 | 0.1 M BIS-Tris pH 5.5, 25 % w/v PEG 3350 |