6Z2G
Crystal structure of human NLRP9 PYD
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-07-13 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0000089 |
Spacegroup name | P 65 2 2 |
Unit cell lengths | 33.330, 33.330, 311.091 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 28.860 - 1.950 |
R-factor | 0.216 |
Rwork | 0.215 |
R-free | 0.22130 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4ewi |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 29.000 | 2.020 |
High resolution limit [Å] | 1.950 | 1.950 |
Rmeas | 0.082 | 1.000 |
Rpim | 0.018 | 0.240 |
Number of reflections | 14097 | 2285 |
<I/σ(I)> | 18.5 | 1.8 |
Completeness [%] | 99.5 | 99.2 |
Redundancy | 22 | 16 |
CC(1/2) | 0.997 | 0.916 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 9 | 288 | 0.1 M Bicine pH 9.0, 0.2 M sodium thiocyanate, 0.1 M sodium formate, and 25-27% v/w PEG3350 |