6YVM

Human OMPD-domain of UMPS in complex with the substrate OMP at 1.25 Angstroms resolution, 2.13 MGy exposure

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)
Synchrotron site	PETRA III, EMBL c/o DESY
Beamline	P14 (MX2)
Temperature [K]	100
Detector technology	PIXEL
Collection date	2018-07-08
Detector	DECTRIS EIGER X 16M
Wavelength(s)	0.82660
Spacegroup name	C 2 2 21
Unit cell lengths	77.330, 116.860, 61.980
Unit cell angles	90.00, 90.00, 90.00

Refinement procedure

Resolution	19.680 - 1.250
R-factor	0.1327
Rwork	0.131
R-free	0.15810
Structure solution method	MOLECULAR REPLACEMENT
Starting model (for MR)	2qcd
RMSD bond length	0.008
RMSD bond angle	1.454
Data reduction software	XDS
Data scaling software	XSCALE
Phasing software	MOLREP
Refinement software	REFMAC (5.8.0258)

Data quality characteristics

	Overall	Inner shell	Outer shell
Low resolution limit [Å]	19.680	20.000	1.300
High resolution limit [Å]	1.250	10.000	1.250
Rmerge	0.083	0.017	1.546
Rmeas	0.089	0.019	1.672
Total number of observations	528932
Number of reflections	77564	156	8528
<I/σ(I)>	15.17	81.05	1.5
Completeness [%]	99.8	98.7	99.8
Redundancy	6.819	5.09	6.839
CC(1/2)	0.999	1.000	0.636

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, HANGING DROP	8	293	Crystallization: 100 mM Tris/HCl pH 8.0, 1.9 - 2.1 M Ammonium sulfate, 10 mM Glutathion, 5% (v/v) Glycerol Soaking: 100 mM Tris/HCl pH 8.0, 2.0 M Ammonium sulfate, 10 mM Glutathion, 5% (v/v) Glycerol, 50 mM OMP Cryo-protection: 100 mM Tris/HCl pH 8.0, 2.0 M Ammonium sulfate, 10 mM Glutathion, 5% (v/v) Glycerol, 50 mM OMP