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6YSP

Arabidopsis aspartate transcarbamoylase complex with PALA and carbamoyl phosphate

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALBA BEAMLINE XALOC
Synchrotron siteALBA
BeamlineXALOC
Temperature [K]100
Detector technologyPIXEL
Collection date2018-05-19
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.97924
Spacegroup nameP 21 21 21
Unit cell lengths86.484, 94.570, 131.839
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution76.840 - 1.380
R-factor0.146
Rwork0.145
R-free0.16760
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6ypo
RMSD bond length0.009
RMSD bond angle1.095
Data reduction softwareautoPROC
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX (1.16_3549)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]76.8401.430
High resolution limit [Å]1.3801.380
Rmerge0.1001.154
Number of reflections22134321917
<I/σ(I)>10.711.35
Completeness [%]100.099.98
Redundancy6.76.6
CC(1/2)0.9940.512
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION294Protein at 5 mg/ml in 20 mM Tris pH 7.0, 0.1 M NaCl, 2% glycerol, 0.2 mM tris(2-carboxyethyl) phosphine (TCEP) and 2 mM PALA Crystallization condition: 25% PEG3350, 0.2 M Li2SO4 and 0.1 M bis-tris pH 5.5. Crystals soaked in mother liquor plus 2 mM PALA and 10 mM carbamoyl phosphate with increasing glycerol concentration (up to 20%) prior to freezing

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PDB entries from 2024-07-10

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