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6YRM

Transaldolase variant T30A from T. acidophilum in complex with D-fructose 6-phosphate Schiff-base intermediate

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)
Synchrotron sitePETRA III, EMBL c/o DESY
BeamlineP14 (MX2)
Temperature [K]100
Detector technologyPIXEL
Collection date2017-08-23
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.9793
Spacegroup nameC 2 2 21
Unit cell lengths148.600, 172.270, 99.950
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution49.027 - 1.700
R-factor0.1759
Rwork0.174
R-free0.20500
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3s0c
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHENIX
Refinement softwarePHENIX (1.13_2998)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]49.02750.0001.800
High resolution limit [Å]1.70020.0001.700
Rmerge0.0530.0222.435
Rmeas0.0570.0252.630
Total number of observations943694
Number of reflections1391708221689
<I/σ(I)>17.2255.421.13
Completeness [%]99.278.898.9
Redundancy6.7814.2566.929
CC(1/2)0.9990.9980.434
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP293188 mM ammonium acetate (pH 4.4), 10% (w/v) PEG 6000, and 25% (v/v) glycerol

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PDB entries from 2024-07-17

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