6YN1
Crystal structure of histone chaperone APLF acidic domain bound to the histone H2A-H2B-H3-H4 octamer
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X6A |
Synchrotron site | NSLS |
Beamline | X6A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-03-16 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 1 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 105.224, 189.686, 204.324 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.990 - 2.350 |
R-factor | 0.1796 |
Rwork | 0.177 |
R-free | 0.23250 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2hio |
RMSD bond length | 0.009 |
RMSD bond angle | 0.954 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 20.000 | 2.330 |
High resolution limit [Å] | 2.200 | 2.200 |
Rmerge | 0.139 | 3.200 |
Rmeas | 0.151 | 3.400 |
Rpim | 0.058 | |
Number of reflections | 206799 | 23719 |
<I/σ(I)> | 11.1 | 0.54 |
Completeness [%] | 99.8 | |
Redundancy | 6.6 | |
CC(1/2) | 0.990 | 0.170 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277 | 0.1 M sodium cacodylate pH6.5, 1.0 M tri-sodium citrate |