6YL2
Structural and DNA binding studies of the transcriptional repressor Rv2506 (BkaR) from Mycobacterium tuberculosis supports a role in L-Leucine catabolism
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-1 |
Synchrotron site | ESRF |
Beamline | ID23-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-03-06 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.97242 |
Spacegroup name | P 2 2 21 |
Unit cell lengths | 58.409, 66.000, 179.732 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 62.030 - 3.150 |
R-factor | 0.2679 |
Rwork | 0.267 |
R-free | 0.28440 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6yj2 |
RMSD bond length | 0.027 |
RMSD bond angle | 1.859 |
Data reduction software | DIALS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 62.030 | 3.200 |
High resolution limit [Å] | 3.150 | 3.150 |
Rmerge | 0.038 | 0.285 |
Rpim | 0.020 | 0.181 |
Number of reflections | 12331 | 597 |
<I/σ(I)> | 11.7 | 1.8 |
Completeness [%] | 98.7 | 99.5 |
Redundancy | 4.3 | 4.3 |
CC(1/2) | 0.999 | 0.982 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 289 | 0.2 M sodium acetate trihydrate, 0.1 M sodium citrate pH 5.5, 5% (w/v) PEG 4000. |