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6YL2

Structural and DNA binding studies of the transcriptional repressor Rv2506 (BkaR) from Mycobacterium tuberculosis supports a role in L-Leucine catabolism

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID23-1
Synchrotron siteESRF
BeamlineID23-1
Temperature [K]100
Detector technologyCCD
Collection date2017-03-06
DetectorADSC QUANTUM 315
Wavelength(s)0.97242
Spacegroup nameP 2 2 21
Unit cell lengths58.409, 66.000, 179.732
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution62.030 - 3.150
R-factor0.2679
Rwork0.267
R-free0.28440
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6yj2
RMSD bond length0.027
RMSD bond angle1.859
Data reduction softwareDIALS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0258)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]62.0303.200
High resolution limit [Å]3.1503.150
Rmerge0.0380.285
Rpim0.0200.181
Number of reflections12331597
<I/σ(I)>11.71.8
Completeness [%]98.799.5
Redundancy4.34.3
CC(1/2)0.9990.982
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP5.52890.2 M sodium acetate trihydrate, 0.1 M sodium citrate pH 5.5, 5% (w/v) PEG 4000.

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PDB entries from 2024-11-06

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