6YK3
Structure of the AMPA receptor GluA2o ligand-binding domain (S1S2J) in complex with the compound ( S) - 1- [2'-Amino-2'-carboxyethyl]-5 ,7- dihydropyrrolo[3,4-d]pyrimidin-2,4(1H,3H)-dione at resolution 1.20A
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX II BEAMLINE I911-3 |
Synchrotron site | MAX II |
Beamline | I911-3 |
Temperature [K] | 100.5 |
Detector technology | CCD |
Collection date | 2013-05-14 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 1.0000 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 59.351, 96.826, 48.538 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 23.541 - 1.200 |
R-factor | 0.1121 |
Rwork | 0.111 |
R-free | 0.14040 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1syh |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.9) |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 25.318 | 25.301 | 1.260 |
High resolution limit [Å] | 1.200 | 3.790 | 1.200 |
Rmerge | 0.037 | 0.402 | |
Rmeas | 0.079 | 0.042 | 0.456 |
Rpim | 0.035 | 0.019 | 0.210 |
Total number of observations | 421917 | 13477 | 58275 |
Number of reflections | 88027 | 2921 | 12709 |
<I/σ(I)> | 12.8 | 30.5 | 3.8 |
Completeness [%] | 99.9 | 97 | 100 |
Redundancy | 4.8 | 4.6 | 4.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 279 | 20% PEG4000, 0.3M ammonium sulfate, 0.1M acetate |