6YK1
Crystal structure of mouse pyridoxal kinase in complex with ATP-gamma-S and artesunate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-1 |
Synchrotron site | ESRF |
Beamline | ID23-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-11-02 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9724 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 279.380, 53.037, 110.149 |
Unit cell angles | 90.00, 91.64, 90.00 |
Refinement procedure
Resolution | 47.200 - 2.400 |
R-factor | 0.2113 |
Rwork | 0.209 |
R-free | 0.25380 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2yxt |
RMSD bond length | 0.002 |
RMSD bond angle | 0.550 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.17.1_3660: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.200 | 2.460 |
High resolution limit [Å] | 2.400 | 2.400 |
Rmerge | 0.046 | 1.069 |
Rpim | 0.053 | 0.704 |
Number of reflections | 63594 | 6235 |
<I/σ(I)> | 8.1 | 1.1 |
Completeness [%] | 1.0 | 99.6 |
Redundancy | 3.4 | 3.2 |
CC(1/2) | 0.996 | 0.541 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.18-0.24 M sodium thiocyanate and 18-26% PEG 3350 |