6YJ2
Structural and DNA binding studies of the transcriptional repressor Rv2506 (BkaR) from Mycobacterium tuberculosis supports a role in L-Leucine catabolism
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SOLEIL BEAMLINE PROXIMA 1 |
Synchrotron site | SOLEIL |
Beamline | PROXIMA 1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-12-07 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.97857 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 181.764, 52.874, 91.919 |
Unit cell angles | 90.00, 90.10, 90.00 |
Refinement procedure
Resolution | 46.000 - 2.000 |
R-factor | 0.1936 |
Rwork | 0.192 |
R-free | 0.22450 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4g12 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.474 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.000 | 2.050 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmerge | 0.052 | 0.554 |
Rpim | 0.034 | 0.351 |
Number of reflections | 59229 | 4355 |
<I/σ(I)> | 12.5 | 2.3 |
Completeness [%] | 99.7 | 99.8 |
Redundancy | 3.4 | 3.5 |
CC(1/2) | 0.998 | 0.808 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 289 | 0.22 M ammonium citrate tribasic pH 7.0, 26.4 % (w/v) polyethylene glycol (PEG) 3350 |