6YIK
Crystal structure of the CREBBP bromodomain in complex with a tetrahydroquinoxaline ligand
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-09-13 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.976250 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 80.230, 43.907, 88.270 |
Unit cell angles | 90.00, 110.06, 90.00 |
Refinement procedure
Resolution | 48.150 - 1.700 |
R-factor | 0.1569 |
Rwork | 0.156 |
R-free | 0.18400 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3dwy |
RMSD bond length | 0.019 |
RMSD bond angle | 2.374 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.22) |
Phasing software | PHASER (2.5.7) |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.151 | 48.151 | 1.790 |
High resolution limit [Å] | 1.697 | 5.360 | 1.700 |
Rmerge | 0.041 | 0.429 | |
Rmeas | 0.056 | 0.049 | 0.510 |
Rpim | 0.030 | 0.027 | 0.272 |
Total number of observations | 215550 | 6811 | 30114 |
Number of reflections | 63697 | 2134 | 8842 |
<I/σ(I)> | 14.3 | 30.3 | 2.9 |
Completeness [%] | 99.0 | 99 | 96.1 |
Redundancy | 3.4 | 3.2 | 3.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 277 | 21% PEG3350 15% ethylene glycol 0.25M sodium formate |