6YEK
Crystal structure of human NEMO apo form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-05-20 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97 |
Spacegroup name | P 43 2 2 |
Unit cell lengths | 85.760, 85.760, 99.010 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 85.760 - 3.200 |
R-factor | 0.2954 |
Rwork | 0.291 |
R-free | 0.33590 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3f89 |
RMSD bond length | 0.014 |
RMSD bond angle | 1.859 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 85.790 | 3.320 |
High resolution limit [Å] | 3.200 | 3.200 |
Number of reflections | 6469 | 638 |
<I/σ(I)> | 35.8 | 8.2 |
Completeness [%] | 99.7 | 100 |
Redundancy | 6.2 | 6.5 |
CC(1/2) | 0.999 | 0.987 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4 | 293 | 45% (v/v) ethylene glycol 50mM acetate (pH 4.0) |