6Y6Z
Structure of Pseudomonas aeruginosa Penicillin-Binding Protein 3 (PBP3) in complex with Compound 1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-02-23 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9159 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 69.101, 83.142, 90.135 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 61.110 - 1.700 |
R-factor | 0.1779 |
Rwork | 0.174 |
R-free | 0.24960 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6hzr |
RMSD bond length | 0.010 |
RMSD bond angle | 1.599 |
Data reduction software | XDS (20171111) |
Data scaling software | Aimless (0.5.32) |
Phasing software | PHASER (2.8.3) |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 61.113 | 1.819 |
High resolution limit [Å] | 1.700 | 1.700 |
Rmerge | 0.160 | 1.241 |
Rmeas | 0.178 | |
Rpim | 0.076 | 0.494 |
Number of reflections | 44456 | 2223 |
<I/σ(I)> | 4.3 | 1.4 |
Completeness [%] | 95.3 | 67.6 |
Redundancy | 5 | 1.4 |
CC(1/2) | 0.998 | 0.650 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.8 | 294 | 25% (w/v) polyethylene glycol 3,350, 0.1M Bis-Tris propane pH 7.8 and 1% (w/v) protamine sulphate |