6Y4Z
The crystal structure of human MACROD2 in space group P43212
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-10-13 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.9762 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 95.360, 95.360, 261.920 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.730 - 1.900 |
R-factor | 0.2018 |
Rwork | 0.201 |
R-free | 0.22770 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4iqy |
RMSD bond length | 0.009 |
RMSD bond angle | 1.563 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0257) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.730 | 47.730 | 1.950 |
High resolution limit [Å] | 1.900 | 8.500 | 1.900 |
Rmerge | 0.081 | 0.024 | 1.650 |
Rmeas | 0.085 | 0.025 | 1.729 |
Total number of observations | 1280920 | ||
Number of reflections | 95967 | 1244 | 7009 |
<I/σ(I)> | 18.92 | 77.14 | 1.25 |
Completeness [%] | 100.0 | 99 | 100 |
Redundancy | 13.348 | 12.116 | 11.395 |
CC(1/2) | 1.000 | 0.999 | 0.746 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.7 | 293 | 0.2 M Ammonium tartarate dibasic pH 6.7, 20% PEG 3350 |