6Y2A
Crystal structure of HLA-B2705 complexed with the nona-peptide mQ
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID14-2 |
Synchrotron site | ESRF |
Beamline | ID14-2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2004-09-20 |
Detector | ADSC QUANTUM 4 |
Wavelength(s) | 0.933 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 50.890, 82.320, 109.610 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 27.920 - 1.250 |
R-factor | 0.1305 |
Rwork | 0.129 |
R-free | 0.15490 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2a83 |
RMSD bond length | 0.014 |
RMSD bond angle | 1.400 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.15.2_3472) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 1.350 |
High resolution limit [Å] | 1.250 | 1.250 |
Rmeas | 0.045 | |
Number of reflections | 125218 | 23666 |
<I/σ(I)> | 24.5 | 3.4 |
Completeness [%] | 98.0 | 90.9 |
Redundancy | 3.6 | 2.1 |
CC(1/2) | 0.999 | 0.895 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 291 | 20% (w/v) PEG8000, 150 mM NaCl and 100 mM Tris-HCl, pH 7.0 |