6XWG
Crystal Structure of the Human RXR/RAR DNA-Binding Domain Heterodimer Bound to the Human RARb2 DR5 Response Element
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-1 |
Synchrotron site | ESRF |
Beamline | ID23-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-11-21 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.006 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 56.714, 56.714, 238.364 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 26.510 - 2.400 |
R-factor | 0.192 |
Rwork | 0.191 |
R-free | 0.20700 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4cn5 |
RMSD bond length | 0.010 |
RMSD bond angle | 0.980 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | BUSTER |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 26.510 | 26.510 | 2.550 |
High resolution limit [Å] | 2.400 | 7.160 | 2.400 |
Rmerge | 0.111 | 0.049 | 5.955 |
Rmeas | 0.118 | 0.052 | 6.294 |
Total number of observations | 156137 | ||
Number of reflections | 16005 | 720 | 2468 |
<I/σ(I)> | 9.77 | 37.91 | 0.29 |
Completeness [%] | 99.2 | 100 | 97.8 |
Redundancy | 9.756 | 10.004 | 8.814 |
CC(1/2) | 0.999 | 0.999 | 0.200 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 25% PEG 3350, 0.2 M Li2SO4, 0.1 M bis-tris pH 6.5 |