6XW5
Crystal structure of murine norovirus P domain in complex with Nanobody NB-5820
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID29 |
Synchrotron site | ESRF |
Beamline | ID29 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-07-19 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.072270 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 101.720, 101.720, 228.520 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.860 - 1.720 |
R-factor | 0.1629 |
Rwork | 0.161 |
R-free | 0.19110 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3lq6 |
RMSD bond length | 0.012 |
RMSD bond angle | 1.735 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.860 | 49.860 | 1.760 |
High resolution limit [Å] | 1.720 | 7.680 | 1.720 |
Rmerge | 0.066 | 0.026 | 0.791 |
Rmeas | 0.069 | 0.027 | 0.824 |
Total number of observations | 1664812 | ||
Number of reflections | 127876 | 1643 | 9247 |
<I/σ(I)> | 22.34 | 62.72 | 3.04 |
Completeness [%] | 99.9 | 99.5 | 99 |
Redundancy | 13.019 | 12.247 | 12.457 |
CC(1/2) | 1.000 | 1.000 | 0.935 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | 25% PEG3000, 0.1M Tris pH 8.5 |