6XVO
Crystal structure of the intertwined dimer of the c-Src SH3 domain without ATCUN motif
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALBA BEAMLINE XALOC |
Synchrotron site | ALBA |
Beamline | XALOC |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-05-25 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97911 |
Spacegroup name | P 65 2 2 |
Unit cell lengths | 47.007, 47.007, 126.190 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 19.370 - 1.700 |
R-factor | 0.2038 |
Rwork | 0.203 |
R-free | 0.21340 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4jz3 |
Data reduction software | XDS |
Data scaling software | Aimless (0.6.3) |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 19.370 | 19.370 | 1.730 |
High resolution limit [Å] | 1.700 | 9.000 | 1.700 |
Rmerge | 0.033 | 0.030 | 0.705 |
Rmeas | 0.036 | 0.034 | 0.755 |
Rpim | 0.013 | 0.015 | 0.265 |
Total number of observations | 438 | 4036 | |
Number of reflections | 16687 | 88 | 506 |
<I/σ(I)> | 26.1 | 55.5 | 2.6 |
Completeness [%] | 99.8 | 90.2 | 100 |
Redundancy | 7.4 | 5 | 8 |
CC(1/2) | 0.999 | 0.999 | 0.804 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5 | 298 | 2.5 ammonium sulfate, 5% PEG 300, 0.1 sodium acetate |