6XU0
Archaeoglobus fulgidus Argonaute protein with DNA oligoduplex 5'-pATCGTGGCCACGAT
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-06-29 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97630 |
Spacegroup name | P 1 |
Unit cell lengths | 51.909, 61.205, 103.092 |
Unit cell angles | 98.32, 104.96, 100.62 |
Refinement procedure
Resolution | 46.439 - 1.900 |
R-factor | 0.1849 |
Rwork | 0.180 |
R-free | 0.22520 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | pdbid 1ytu |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.22) |
Phasing software | MOLREP |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.785 | 48.785 | 2.000 |
High resolution limit [Å] | 1.900 | 6.010 | 1.900 |
Rmerge | 0.038 | 0.638 | |
Rmeas | 0.079 | 0.049 | 0.894 |
Rpim | 0.040 | 0.025 | 0.449 |
Total number of observations | 10888 | 48635 | |
Number of reflections | 85105 | 2769 | 12355 |
<I/σ(I)> | 8.3 | 21.7 | 1.7 |
Completeness [%] | 91.5 | 94 | 90.9 |
Redundancy | 3.9 | 3.9 | 3.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 280 | Na-Cacodylate pH 6.5 0.05 M, KCl_0.04 M, MgCl2 0.01 M, PEG3350 11% (w/v) |