6XQI
Structure of HIV-1 Vpr in complex with the human nucleotide excision repair protein hHR23A
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL9-2 |
Synchrotron site | SSRL |
Beamline | BL9-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-06-08 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97946 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 130.165, 130.165, 81.305 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 24.783 - 2.340 |
R-factor | 0.2022 |
Rwork | 0.202 |
R-free | 0.21970 |
Structure solution method | SAD |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.15.1_3469) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 24.783 | 24.783 | 2.390 |
High resolution limit [Å] | 2.340 | 9.390 | 2.340 |
Rmerge | 0.114 | 0.041 | 9.900 |
Rmeas | 0.125 | 0.045 | 14.774 |
Number of reflections | 41494 | 478 | 2424 |
<I/σ(I)> | 6.46 | 24.14 | 0.1 |
Completeness [%] | 89.4 | 82.1 | 71.5 |
Redundancy | 4.508 | 5.584 | 1.838 |
CC(1/2) | 0.998 | 0.998 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 289 | 0.1M Tris, pH 7.5, 10% PEG 4000 |