6XQ8
Receptor for Advanced Glycation End Products VC1 domain in complex with Fragments 1 & 11
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-G |
Synchrotron site | APS |
Beamline | 21-ID-G |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-02-15 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.97857 |
Spacegroup name | P 62 |
Unit cell lengths | 102.017, 102.017, 102.779 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 45.690 - 1.820 |
R-factor | 0.1994 |
Rwork | 0.198 |
R-free | 0.21830 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4lp4 |
RMSD bond length | 0.019 |
RMSD bond angle | 1.504 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHENIX |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.890 |
High resolution limit [Å] | 1.820 | 1.820 |
Rmeas | 0.056 | 0.309 |
Rpim | 0.019 | 0.107 |
Number of reflections | 107292 | 10717 |
<I/σ(I)> | 19.22 | 5.05 |
Completeness [%] | 99.9 | |
Redundancy | 4.2 | 4.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 277 | 2.5 M NaOAc (pH 7.5) |