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6XP2

Structure of human PYCR1 complexed with L-thiazolidine-4-carboxylate

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 4.2.2
Synchrotron siteALS
Beamline4.2.2
Temperature [K]100
Detector technologyCMOS
Collection date2018-04-26
DetectorRDI CMOS_8M
Wavelength(s)1.000
Spacegroup nameP 21 21 2
Unit cell lengths163.157, 88.000, 115.789
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution49.226 - 2.300
R-factor0.1995
Rwork0.198
R-free0.24730
Structure solution methodFOURIER SYNTHESIS
Starting model (for MR)5uau
Data reduction softwareXDS
Data scaling softwareAimless (0.7.4)
Phasing softwarePHENIX
Refinement softwarePHENIX (1.14)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]49.23049.2302.350
High resolution limit [Å]2.30011.2702.300
Rmerge0.0910.0230.915
Rmeas0.0990.0250.989
Rpim0.0380.0100.371
Total number of observations515383462832323
Number of reflections746897314551
<I/σ(I)>15.544.92.2
Completeness [%]99.998.4100
Redundancy6.96.37.1
CC(1/2)0.9981.0000.848
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP295Crystallization reservoir contained 250 mM Li2SO4, 19% (w/v) PEG 3350, and 0.1 M HEPES at pH 7.5. Crystal was soaked in cryobuffer containing 50 mM L-thiazolidine-4-carboxylate and 20% PEG 200.

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PDB entries from 2025-06-18

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