6XP2
Structure of human PYCR1 complexed with L-thiazolidine-4-carboxylate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 4.2.2 |
Synchrotron site | ALS |
Beamline | 4.2.2 |
Temperature [K] | 100 |
Detector technology | CMOS |
Collection date | 2018-04-26 |
Detector | RDI CMOS_8M |
Wavelength(s) | 1.000 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 163.157, 88.000, 115.789 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.226 - 2.300 |
R-factor | 0.1995 |
Rwork | 0.198 |
R-free | 0.24730 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 5uau |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHENIX |
Refinement software | PHENIX (1.14) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.230 | 49.230 | 2.350 |
High resolution limit [Å] | 2.300 | 11.270 | 2.300 |
Rmerge | 0.091 | 0.023 | 0.915 |
Rmeas | 0.099 | 0.025 | 0.989 |
Rpim | 0.038 | 0.010 | 0.371 |
Total number of observations | 515383 | 4628 | 32323 |
Number of reflections | 74689 | 731 | 4551 |
<I/σ(I)> | 15.5 | 44.9 | 2.2 |
Completeness [%] | 99.9 | 98.4 | 100 |
Redundancy | 6.9 | 6.3 | 7.1 |
CC(1/2) | 0.998 | 1.000 | 0.848 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 295 | Crystallization reservoir contained 250 mM Li2SO4, 19% (w/v) PEG 3350, and 0.1 M HEPES at pH 7.5. Crystal was soaked in cryobuffer containing 50 mM L-thiazolidine-4-carboxylate and 20% PEG 200. |