6XM7
Crystal structure of DCA-S bound to Co-LSD4 from Sphingobium sp. strain SYK-6
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CLSI BEAMLINE 08ID-1 |
Synchrotron site | CLSI |
Beamline | 08ID-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-08-10 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.97857 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 85.320, 112.020, 114.670 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 43.800 - 1.450 |
R-factor | 0.1353 |
Rwork | 0.134 |
R-free | 0.15380 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6ojr |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX |
Refinement software | PHENIX (1.14-3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 43.800 | 43.800 | 1.550 |
High resolution limit [Å] | 1.450 | 5.000 | 1.450 |
Rmerge | 0.043 | 0.032 | 0.503 |
Rmeas | 0.052 | 0.038 | 0.633 |
Total number of observations | 594735 | ||
Number of reflections | 184209 | 4579 | 30336 |
<I/σ(I)> | 15.68 | 34.34 | 1.94 |
Completeness [%] | 97.8 | 99.6 | 88.9 |
Redundancy | 3.229 | 3.486 | 2.43 |
CC(1/2) | 0.998 | 0.997 | 0.854 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 293 | 0.3 M magnesium acetate, 29% PEG3350 |