6XH2
Co-crystal structure of HIV-1 TAR RNA in complex with lab-evolved RRM 6.6
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-05-10 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9795 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 40.300, 40.300, 288.683 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.815 - 1.710 |
R-factor | 0.1926 |
Rwork | 0.191 |
R-free | 0.20920 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6cmn |
RMSD bond length | 0.010 |
RMSD bond angle | 1.251 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.32) |
Phasing software | PHASER |
Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.910 | 1.740 |
High resolution limit [Å] | 1.710 | 1.710 |
Rpim | 0.033 | 0.385 |
Number of reflections | 26782 | 1245 |
<I/σ(I)> | 10.7 | 1.5 |
Completeness [%] | 99.2 | |
Redundancy | 8.2 | |
CC(1/2) | 0.994 | 0.635 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 293.15 | 0.05 M Sodium Cacodylate pH 7.0, 0.1 M Sodium Chloride, 0.002 M Ammonium Sulfate, 17% (w/v) PEG-5000 MME |