6X1J
The homing endonuclease I-WcaI bound to its DNA recognition sequence
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-02-17 |
Detector | RAYONIX MX300HE |
Wavelength(s) | 0.97872 |
Spacegroup name | P 1 2 1 |
Unit cell lengths | 67.601, 37.281, 94.064 |
Unit cell angles | 90.00, 100.44, 90.00 |
Refinement procedure
Resolution | 29.880 - 1.945 |
R-factor | 0.229 |
Rwork | 0.227 |
R-free | 0.26120 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1r7m |
RMSD bond length | 0.009 |
RMSD bond angle | 1.760 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER (2.6.1) |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 2.020 |
High resolution limit [Å] | 1.945 | 1.945 |
Rmerge | 0.720 | |
Rmeas | 0.198 | 0.858 |
Rpim | 0.104 | 0.461 |
Number of reflections | 33735 | 3306 |
<I/σ(I)> | 6.5 | 1.6 |
Completeness [%] | 99.8 | 99.6 |
Redundancy | 3.6 | 3.3 |
CC(1/2) | 0.964 | 0.807 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 298 | 21% PEG 3350, 0.1M Tris-HCl, 0.2M Lithium sulfate, 2 mM DTT |