6X0I
Structure of oxidized SidA ornithine hydroxylase with the FAD "in" and complexed with NADP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 4.2.2 |
Synchrotron site | ALS |
Beamline | 4.2.2 |
Temperature [K] | 100 |
Detector technology | CMOS |
Collection date | 2016-04-27 |
Detector | RDI CMOS_8M |
Wavelength(s) | 1.00004 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 80.507, 154.868, 90.483 |
Unit cell angles | 90.00, 109.25, 90.00 |
Refinement procedure
Resolution | 63.210 - 1.950 |
R-factor | 0.1703 |
Rwork | 0.168 |
R-free | 0.21100 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4b63 |
RMSD bond length | 0.006 |
RMSD bond angle | 0.869 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.23) |
Phasing software | PHASER |
Refinement software | PHENIX (1.14) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 63.210 | 63.210 | 1.980 |
High resolution limit [Å] | 1.950 | 10.680 | 1.950 |
Rmerge | 0.092 | 0.022 | 0.790 |
Rmeas | 0.108 | 0.026 | 0.947 |
Rpim | 0.056 | 0.014 | 0.516 |
Total number of observations | 544409 | 3440 | 24487 |
Number of reflections | 151085 | 954 | 7458 |
<I/σ(I)> | 12.1 | 46.4 | 1.5 |
Completeness [%] | 99.5 | 98.2 | 99 |
Redundancy | 3.6 | 3.6 | 3.3 |
CC(1/2) | 0.997 | 0.999 | 0.523 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 7.5 | 293 | Enzyme stock solution: 8-10 mg/mL SidA and 1 mM NADP in 25 mM HEPES (pH 7.5) and 100 mM NaCl. Crystallization reservoir: 17-21 % PEG-3350, 0.1 M HEPES (pH 7.5), 0.1 M calcium acetate. Cryo-buffer: 15 % PEG-200, 20 % PEG 3350, 0.1 M HEPES (pH 7.5), 0.1 M calcium acetate |