6WS4
Crystal structure of KRAS-G12D/K104Q mutant, GDP-bound
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-08-10 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.979180 |
Spacegroup name | P 3 |
Unit cell lengths | 84.930, 84.930, 89.300 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 44.650 - 1.840 |
R-factor | 0.1345 |
Rwork | 0.133 |
R-free | 0.15800 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5us4 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.561 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 44.650 | 44.650 | 1.950 |
High resolution limit [Å] | 1.840 | 5.480 | 1.840 |
Rmerge | 0.119 | 0.079 | 0.555 |
Rmeas | 0.129 | 0.085 | 0.602 |
Total number of observations | 427375 | ||
Number of reflections | 62031 | 2348 | 10046 |
<I/σ(I)> | 10.09 | 20.07 | 2.69 |
Completeness [%] | 100.0 | 99.8 | 100 |
Redundancy | 6.89 | 7.361 | 7.04 |
CC(1/2) | 0.994 | 0.997 | 0.779 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.3 | 293 | 3.0 % Xylitol, 0.2 M ammonium acetate and 2.2 M ammonium sulfate |