6W4W
Crystal Structure of the Fab fragment of humanized 5c8 antibody
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-04-08 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.97934 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 90.894, 60.305, 73.456 |
Unit cell angles | 90.00, 96.27, 90.00 |
Refinement procedure
Resolution | 50.160 - 1.770 |
R-factor | 0.171 |
Rwork | 0.169 |
R-free | 0.20420 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1i9r |
RMSD bond length | 0.015 |
RMSD bond angle | 1.758 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER (2.6.1) |
Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.160 | 50.000 | 1.800 |
High resolution limit [Å] | 1.770 | 4.800 | 1.770 |
Rmerge | 0.052 | 0.030 | 0.324 |
Rmeas | 0.057 | 0.032 | 0.356 |
Rpim | 0.022 | 0.012 | 0.143 |
Number of reflections | 38013 | 1995 | 1790 |
<I/σ(I)> | 11.1 | ||
Completeness [%] | 98.1 | 98.8 | 94.4 |
Redundancy | 6.3 | 6.5 | 5.6 |
CC(1/2) | 0.999 | 0.936 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 273 | 33% PEG 3350, 0.1 M Citric Acid/Sodium Citrate pH 4.0 |