6W4T
APE1 Y269A phosphorothioate substrate complex with abasic DNA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 4.2.2 |
Synchrotron site | ALS |
Beamline | 4.2.2 |
Temperature [K] | 100 |
Detector technology | CMOS |
Collection date | 2019-11-05 |
Detector | RDI CMOS_8M |
Wavelength(s) | 1.00 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 45.659, 148.315, 153.235 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.290 - 2.770 |
R-factor | 0.224 |
Rwork | 0.221 |
R-free | 0.27410 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5dff |
RMSD bond length | 0.018 |
RMSD bond angle | 1.432 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHENIX |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.290 | 2.920 |
High resolution limit [Å] | 2.770 | 2.770 |
Rmeas | 0.261 | 2.670 |
Number of reflections | 27446 | 3910 |
<I/σ(I)> | 7.4 | |
Completeness [%] | 100.0 | 100 |
Redundancy | 6.8 | 6.8 |
CC(1/2) | 0.395 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 291 | 27% PEG 3350, 100 mM Bis Tris Propane (pH 6.5), 200 mM Sodium Fluoride |