6W2J
CPS1 bound to allosteric inhibitor H3B-374
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X17B1 |
Synchrotron site | NSLS |
Beamline | X17B1 |
Temperature [K] | 120 |
Detector technology | PIXEL |
Collection date | 2019-03-14 |
Detector | DECTRIS EIGER2 X 9M |
Wavelength(s) | 0.9201 |
Spacegroup name | P 1 |
Unit cell lengths | 71.660, 98.530, 142.530 |
Unit cell angles | 102.13, 97.94, 106.11 |
Refinement procedure
Resolution | 58.960 - 2.620 |
R-factor | 0.1927 |
Rwork | 0.190 |
R-free | 0.25030 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6uel |
RMSD bond length | 0.012 |
RMSD bond angle | 1.561 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 58.960 | 58.960 | 2.690 |
High resolution limit [Å] | 2.620 | 11.720 | 2.620 |
Rmerge | 0.072 | 0.019 | 0.523 |
Rmeas | 0.098 | 0.025 | 0.711 |
Total number of observations | 213566 | ||
Number of reflections | 104121 | 1142 | 7718 |
<I/σ(I)> | 9.35 | 33.08 | 1.68 |
Completeness [%] | 96.6 | 94.8 | 96.3 |
Redundancy | 2.051 | 2.064 | 2.113 |
CC(1/2) | 0.996 | 0.999 | 0.688 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | CPS1 protein was buffer exchanged into 50 mM glycyl-glycine pH 7.4, 50 mM KCl, 5% glycerol. CPS1 was concentrated to 10 mg/ml and H3B-4193 was added to a 5x excess molar ratio along with 1mM AMPPNP and 1mM NAG. Ligand bound complex crystals grew by hanging drop vapor diffusion in 20% PEG 3350 and 0.2M trisodium citrate |