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6W2J

CPS1 bound to allosteric inhibitor H3B-374

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS BEAMLINE X17B1
Synchrotron siteNSLS
BeamlineX17B1
Temperature [K]120
Detector technologyPIXEL
Collection date2019-03-14
DetectorDECTRIS EIGER2 X 9M
Wavelength(s)0.9201
Spacegroup nameP 1
Unit cell lengths71.660, 98.530, 142.530
Unit cell angles102.13, 97.94, 106.11
Refinement procedure
Resolution58.960 - 2.620
R-factor0.1927
Rwork0.190
R-free0.25030
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6uel
RMSD bond length0.012
RMSD bond angle1.561
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMOLREP
Refinement softwareREFMAC (5.8.0158)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]58.96058.9602.690
High resolution limit [Å]2.62011.7202.620
Rmerge0.0720.0190.523
Rmeas0.0980.0250.711
Total number of observations213566
Number of reflections10412111427718
<I/σ(I)>9.3533.081.68
Completeness [%]96.694.896.3
Redundancy2.0512.0642.113
CC(1/2)0.9960.9990.688
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP293CPS1 protein was buffer exchanged into 50 mM glycyl-glycine pH 7.4, 50 mM KCl, 5% glycerol. CPS1 was concentrated to 10 mg/ml and H3B-4193 was added to a 5x excess molar ratio along with 1mM AMPPNP and 1mM NAG. Ligand bound complex crystals grew by hanging drop vapor diffusion in 20% PEG 3350 and 0.2M trisodium citrate

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PDB entries from 2024-07-31

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